Visualizing DNA binding sites: Sequence Logos and Walkers

by Paul N. Hengen, Ph.D. (pnh@sirius.com)

http://www-lecb.ncifcrf.gov/~pnh/papers/poster/ucb.htm

Section 1. Where can I find all this good stuff?

National Cancer Institute

  • Laboratory of Experimental and Computational Biology http://www-lecb.ncifcrf.gov/
  • Paul N. Hengen's Page http://www-lecb.ncifcrf.gov/~pnh
  • Tom Schneider's Page http://www-lecb.ncifcrf.gov/~toms

    Section 2. What is a Sequence Logo?

    Introduction to Logos

    Section 3. What is a Sequence Walker?

    Introduction to Walkers

    Section 4: Example Studies with Logos and Walkers

    Predictions and Design of Fis binding sites

    Analysis of Human Splice Junctions

    Section 5: Summary / Abstract

    A summary for the use of Walkers for Scanning Genomes is at http://www-lecb.ncifcrf.gov/~pnh/papers/walker/human_genome_summary.html


    Section 6: References

    All of the papers described are available from Tom Schneider's archive site at http://www-lecb.ncifcrf.gov/~toms/paper/index.html