* rseq 5.36 rsequence calculated from encoded sequences from: * encode 1.34; encoding of sequences in * * 1997/05/12 15:44:14, 1997/05/12 15:07:53, version = 2.01 of spliceA.in splice acceptor from -50 to 50 * * genomic probabilities from: * the composition file is empty. * (equal mononucleotides assumed) * the genomic composition used is: a = 1, c = 1, g = 1, t = 1 * * genomic information, hg: 2.00000 bits/base * * -50 50 is the range * * l position in aligned set * a..t number of each base at the position l * rs(l) rsequence(l) * rs rsequence, running sum of rs(l) * var(hnb) variance of hnb * sum-var running sum of var(hnb) * n(l) number of sequence examples at l * e(hnb) expectation of hnb * f flag for calculation of e(hnb) and var(hnb): * e = exact, a = approximation * * l a c g t rs(l) rs var(hnb) sum-var n(l) e(hnb) f -50 243 295 326 341 0.00970 0.00970 3.2252e-06 3.2252e-06 1205 1.99820 a -49 275 285 373 273 0.01128 0.02098 3.2199e-06 6.4451e-06 1206 1.99821 a -48 237 336 322 314 0.01049 0.03147 3.2039e-06 9.6490e-06 1209 1.99821 a -47 271 323 316 303 0.00140 0.03286 3.1828e-06 1.2832e-05 1213 1.99822 a -46 255 296 326 339 0.00653 0.03940 3.1671e-06 1.5999e-05 1216 1.99822 a -45 243 330 321 326 0.00875 0.04814 3.1464e-06 1.9145e-05 1220 1.99823 a -44 262 306 331 324 0.00394 0.05208 3.1310e-06 2.2276e-05 1223 1.99823 a -43 270 300 329 327 0.00272 0.05480 3.1157e-06 2.5392e-05 1226 1.99823 a -42 245 336 288 363 0.01402 0.06883 3.0854e-06 2.8477e-05 1232 1.99824 a -41 270 329 327 309 0.00259 0.07142 3.0704e-06 3.1548e-05 1235 1.99825 a -40 277 342 298 323 0.00282 0.07424 3.0457e-06 3.4593e-05 1240 1.99825 a -39 246 322 341 339 0.00998 0.08422 3.0068e-06 3.7600e-05 1248 1.99827 a -38 251 343 330 327 0.00836 0.09258 2.9924e-06 4.0593e-05 1251 1.99827 a -37 293 334 305 324 0.00015 0.09273 2.9686e-06 4.3561e-05 1256 1.99828 a -36 263 355 300 339 0.00774 0.10046 2.9639e-06 4.6525e-05 1257 1.99828 a -35 253 356 315 338 0.00963 0.11009 2.9404e-06 4.9466e-05 1262 1.99829 a -34 271 347 297 348 0.00627 0.11637 2.9358e-06 5.2401e-05 1263 1.99829 a -33 260 367 299 341 0.01039 0.12675 2.9173e-06 5.5319e-05 1267 1.99829 a -32 279 366 280 345 0.00901 0.13576 2.9035e-06 5.8222e-05 1270 1.99830 a -31 276 376 263 359 0.01584 0.15160 2.8853e-06 6.1107e-05 1274 1.99830 a -30 274 366 278 360 0.01176 0.16337 2.8673e-06 6.3975e-05 1278 1.99831 a -29 272 385 273 358 0.01599 0.17935 2.8229e-06 6.6798e-05 1288 1.99832 a -28 298 382 246 364 0.01911 0.19846 2.8142e-06 6.9612e-05 1290 1.99832 a -27 304 352 261 375 0.01193 0.21039 2.8055e-06 7.2417e-05 1292 1.99833 a -26 285 390 250 368 0.02153 0.23192 2.8011e-06 7.5218e-05 1293 1.99833 a -25 309 392 208 386 0.03892 0.27084 2.7925e-06 7.8011e-05 1295 1.99833 a -24 282 420 216 388 0.04492 0.31576 2.7457e-06 8.0757e-05 1306 1.99834 a -23 273 392 220 424 0.04656 0.36232 2.7331e-06 8.3490e-05 1309 1.99835 a -22 290 411 214 397 0.04389 0.40621 2.7206e-06 8.6210e-05 1312 1.99835 a -21 309 400 194 416 0.05405 0.46026 2.6918e-06 8.8902e-05 1319 1.99836 a -20 248 412 203 461 0.07689 0.53715 2.6715e-06 9.1574e-05 1324 1.99837 a -19 256 388 225 482 0.06556 0.60271 2.5658e-06 9.4139e-05 1351 1.99840 a -18 213 442 246 455 0.07640 0.67911 2.5469e-06 9.6686e-05 1356 1.99840 a -17 201 453 183 535 0.14716 0.82626 2.4878e-06 9.9174e-05 1372 1.99842 a -16 193 471 199 517 0.13868 0.96494 2.4591e-06 1.0163e-04 1380 1.99843 a -15 182 459 212 533 0.14130 1.10624 2.4378e-06 1.0407e-04 1386 1.99844 a -14 158 476 193 619 0.21003 1.31626 2.2397e-06 1.0631e-04 1446 1.99850 a -13 135 486 197 656 0.24705 1.56331 2.1554e-06 1.0847e-04 1474 1.99853 a -12 122 511 174 673 0.29192 1.85523 2.1380e-06 1.1060e-04 1480 1.99854 a -11 121 500 152 732 0.33820 2.19343 2.0676e-06 1.1267e-04 1505 1.99856 a -10 110 483 149 775 0.37453 2.56796 2.0350e-06 1.1471e-04 1517 1.99857 a -9 131 534 175 800 0.33069 2.89864 1.7412e-06 1.1645e-04 1640 1.99868 a -8 156 583 192 727 0.26594 3.16459 1.7036e-06 1.1815e-04 1658 1.99869 a -7 172 656 172 674 0.26603 3.43061 1.6712e-06 1.1982e-04 1674 1.99871 a -6 165 653 158 726 0.29943 3.73004 1.6166e-06 1.2144e-04 1702 1.99873 a -5 123 691 110 788 0.42780 4.15784 1.5978e-06 1.2304e-04 1712 1.99874 a -4 127 590 103 914 0.46442 4.62226 1.5575e-06 1.2459e-04 1734 1.99875 a -3 394 499 432 411 0.00471 4.62697 1.5539e-06 1.2615e-04 1736 1.99875 a -2 67 1253 20 397 0.91686 5.54383 1.5521e-06 1.2770e-04 1737 1.99875 a -1 1717 10 6 10 1.86380 7.40763 1.5415e-06 1.2924e-04 1743 1.99876 a 0 9 11 1720 4 1.87362 9.28125 1.5397e-06 1.3078e-04 1744 1.99876 a 1 449 231 871 187 0.26179 9.54304 1.5504e-06 1.3233e-04 1738 1.99875 a 2 426 308 413 590 0.03708 9.58012 1.5521e-06 1.3388e-04 1737 1.99875 a 3 424 426 419 468 0.00021 9.58033 1.5521e-06 1.3544e-04 1737 1.99875 a 4 400 487 440 410 0.00307 9.58340 1.5521e-06 1.3699e-04 1737 1.99875 a 5 424 502 347 464 0.01168 9.59508 1.5521e-06 1.3854e-04 1737 1.99875 a 6 394 527 424 392 0.00992 9.60500 1.5521e-06 1.4009e-04 1737 1.99875 a 7 441 431 485 380 0.00412 9.60912 1.5521e-06 1.4165e-04 1737 1.99875 a 8 450 462 445 376 0.00322 9.61234 1.5593e-06 1.4320e-04 1733 1.99875 a 9 409 423 506 393 0.00586 9.61820 1.5629e-06 1.4477e-04 1731 1.99875 a 10 424 408 545 348 0.01810 9.63630 1.5738e-06 1.4634e-04 1725 1.99875 a 11 460 399 507 358 0.01136 9.64766 1.5756e-06 1.4792e-04 1724 1.99874 a 12 423 439 473 389 0.00230 9.64996 1.5756e-06 1.4949e-04 1724 1.99874 a 13 457 479 452 336 0.01145 9.66142 1.5756e-06 1.5107e-04 1724 1.99874 a 14 441 460 397 426 0.00082 9.66224 1.5756e-06 1.5264e-04 1724 1.99874 a 15 430 461 471 362 0.00600 9.66823 1.5756e-06 1.5422e-04 1724 1.99874 a 16 428 499 458 339 0.01259 9.68082 1.5756e-06 1.5579e-04 1724 1.99874 a 17 474 445 434 371 0.00435 9.68517 1.5756e-06 1.5737e-04 1724 1.99874 a 18 406 483 500 334 0.01620 9.70137 1.5775e-06 1.5895e-04 1723 1.99874 a 19 448 423 529 323 0.02019 9.72157 1.5775e-06 1.6053e-04 1723 1.99874 a 20 438 422 465 398 0.00105 9.72262 1.5775e-06 1.6210e-04 1723 1.99874 a 21 411 475 501 336 0.01497 9.73759 1.5775e-06 1.6368e-04 1723 1.99874 a 22 475 459 428 361 0.00636 9.74395 1.5775e-06 1.6526e-04 1723 1.99874 a 23 429 471 420 402 0.00121 9.74516 1.5793e-06 1.6684e-04 1722 1.99874 a 24 397 506 476 343 0.01507 9.76023 1.5793e-06 1.6842e-04 1722 1.99874 a 25 479 468 434 341 0.01069 9.77092 1.5793e-06 1.7000e-04 1722 1.99874 a 26 436 489 421 375 0.00519 9.77611 1.5811e-06 1.7158e-04 1721 1.99874 a 27 417 424 499 380 0.00590 9.78200 1.5830e-06 1.7316e-04 1720 1.99874 a 28 419 414 542 345 0.01797 9.79997 1.5830e-06 1.7474e-04 1720 1.99874 a 29 438 422 445 414 -0.00066 9.79931 1.5848e-06 1.7633e-04 1719 1.99874 a 30 396 434 520 369 0.01114 9.81045 1.5848e-06 1.7791e-04 1719 1.99874 a 31 416 469 469 363 0.00645 9.81690 1.5885e-06 1.7950e-04 1717 1.99874 a 32 422 450 417 428 -0.00064 9.81625 1.5885e-06 1.8109e-04 1717 1.99874 a 33 385 472 495 365 0.01075 9.82700 1.5885e-06 1.8268e-04 1717 1.99874 a 34 437 431 461 387 0.00157 9.82857 1.5904e-06 1.8427e-04 1716 1.99874 a 35 436 468 397 414 0.00149 9.83006 1.5922e-06 1.8586e-04 1715 1.99874 a 36 403 462 457 393 0.00252 9.83257 1.5922e-06 1.8745e-04 1715 1.99874 a 37 430 399 533 351 0.01586 9.84844 1.5959e-06 1.8905e-04 1713 1.99874 a 38 447 423 471 369 0.00447 9.85291 1.6015e-06 1.9065e-04 1710 1.99873 a 39 391 476 466 376 0.00648 9.85939 1.6034e-06 1.9225e-04 1709 1.99873 a 40 467 436 476 330 0.01273 9.87212 1.6034e-06 1.9386e-04 1709 1.99873 a 41 439 499 396 375 0.00750 9.87962 1.6034e-06 1.9546e-04 1709 1.99873 a 42 407 491 460 349 0.01048 9.89009 1.6072e-06 1.9707e-04 1707 1.99873 a 43 439 436 475 355 0.00660 9.89670 1.6110e-06 1.9868e-04 1705 1.99873 a 44 446 443 449 367 0.00355 9.90025 1.6110e-06 2.0029e-04 1705 1.99873 a 45 419 403 530 352 0.01507 9.91531 1.6128e-06 2.0190e-04 1704 1.99873 a 46 436 407 510 349 0.01208 9.92739 1.6166e-06 2.0352e-04 1702 1.99873 a 47 413 467 455 367 0.00497 9.93237 1.6166e-06 2.0514e-04 1702 1.99873 a 48 418 451 473 359 0.00625 9.93861 1.6185e-06 2.0675e-04 1701 1.99873 a 49 475 390 492 343 0.01384 9.95246 1.6204e-06 2.0837e-04 1700 1.99873 a 50 450 477 397 370 0.00591 9.95836 1.6319e-06 2.1001e-04 1694 1.99872 a * rsequence = 9.95836 +/- 0.01449 bits/site