* rseq 5.32 rsequence calculated from encoded sequences from: * encode 1.28; encoding of sequences in * * 90/10/17 18:43:44, 84/02/24 02:11:12, t7.polymerase * * genomic probabilities from: * the composition file is empty. * (equal mononucleotides assumed) * the genomic composition used is: a = 1, c = 1, g = 1, t = 1 * * genomic information, hg: 2.00000 bits/base * * -49 32 is the range * * l position in aligned set * a..t number of each base at the position l * rs(l) rsequence(l) * rs rsequence, running sum of rs(l) * var(hnb) variance of hnb * sum-var running sum of var(hnb) * n(l) number of sequence examples at l * e(hnb) expectation of hnb * f flag for calculation of e(hnb) and var(hnb): * e = exact, a = approximation * * l a c g t rs(l) rs var(hnb) sum-var n(l) e(hnb) f -49 6 3 5 3 -0.06872 -0.06872 0.01287 0.01287 17 1.86408 e -48 6 3 3 5 -0.06872 -0.13744 0.01287 0.02574 17 1.86408 e -47 8 2 2 5 0.10660 -0.03084 0.01287 0.03861 17 1.86408 e -46 5 5 4 3 -0.10725 -0.13809 0.01287 0.05148 17 1.86408 e -45 3 5 3 6 -0.06872 -0.20681 0.01287 0.06435 17 1.86408 e -44 4 1 9 3 0.20510 -0.00171 0.01287 0.07722 17 1.86408 e -43 6 2 5 4 -0.03988 -0.04159 0.01287 0.09009 17 1.86408 e -42 3 2 4 8 0.05632 0.01473 0.01287 0.10295 17 1.86408 e -41 4 5 4 4 -0.12869 -0.11397 0.01287 0.11582 17 1.86408 e -40 3 2 4 8 0.05632 -0.05765 0.01287 0.12869 17 1.86408 e -39 4 2 4 7 -0.00859 -0.06623 0.01287 0.14156 17 1.86408 e -38 5 4 4 4 -0.12869 -0.19493 0.01287 0.15443 17 1.86408 e -37 7 3 2 5 0.01286 -0.18207 0.01287 0.16730 17 1.86408 e -36 3 7 2 5 0.01286 -0.16921 0.01287 0.18017 17 1.86408 e -35 3 5 3 6 -0.06872 -0.23793 0.01287 0.19304 17 1.86408 e -34 4 3 5 5 -0.10725 -0.34519 0.01287 0.20591 17 1.86408 e -33 1 3 5 8 0.15100 -0.19418 0.01287 0.21878 17 1.86408 e -32 4 4 2 7 -0.00859 -0.20277 0.01287 0.23165 17 1.86408 e -31 3 2 8 4 0.05632 -0.14645 0.01287 0.24452 17 1.86408 e -30 5 1 6 5 0.05480 -0.09165 0.01287 0.25739 17 1.86408 e -29 6 4 7 0 0.31552 0.22387 0.01287 0.27026 17 1.86408 e -28 6 3 3 5 -0.06872 0.15515 0.01287 0.28313 17 1.86408 e -27 5 3 5 4 -0.10725 0.04790 0.01287 0.29600 17 1.86408 e -26 2 4 7 4 -0.00859 0.03932 0.01287 0.30886 17 1.86408 e -25 1 8 4 4 0.12956 0.16888 0.01287 0.32173 17 1.86408 e -24 3 3 4 7 -0.03742 0.13145 0.01287 0.33460 17 1.86408 e -23 3 9 2 3 0.13186 0.26332 0.01287 0.34747 17 1.86408 e -22 3 4 6 4 -0.09016 0.17315 0.01287 0.36034 17 1.86408 e -21 8 3 4 2 0.05632 0.22947 0.01287 0.37321 17 1.86408 e -20 12 0 2 3 0.70453 0.93400 0.01287 0.38608 17 1.86408 e -19 10 1 3 3 0.29009 1.22410 0.01287 0.39895 17 1.86408 e -18 3 1 3 10 0.29009 1.51419 0.01287 0.41182 17 1.86408 e -17 0 3 0 14 1.19179 2.70598 0.01287 0.42469 17 1.86408 e -16 16 0 0 1 1.54133 4.24731 0.01287 0.43756 17 1.86408 e -15 17 0 0 0 1.86408 6.11139 0.01287 0.45043 17 1.86408 e -14 0 0 0 17 1.86408 7.97548 0.01287 0.46330 17 1.86408 e -13 14 1 0 2 1.02974 9.00521 0.01287 0.47617 17 1.86408 e -12 0 16 1 0 1.54133 10.54654 0.01287 0.48904 17 1.86408 e -11 2 0 15 0 1.34152 11.88806 0.01287 0.50191 17 1.86408 e -10 17 0 0 0 1.86408 13.75215 0.01287 0.51477 17 1.86408 e -9 0 17 0 0 1.86408 15.61623 0.01287 0.52764 17 1.86408 e -8 0 0 0 17 1.86408 17.48032 0.01287 0.54051 17 1.86408 e -7 0 17 0 0 1.86408 19.34440 0.01287 0.55338 17 1.86408 e -6 17 0 0 0 1.86408 21.20848 0.01287 0.56625 17 1.86408 e -5 0 16 1 0 1.54133 22.74981 0.01287 0.57912 17 1.86408 e -4 0 0 0 17 1.86408 24.61389 0.01287 0.59199 17 1.86408 e -3 17 0 0 0 1.86408 26.47798 0.01287 0.60486 17 1.86408 e -2 5 0 0 12 0.99010 27.46808 0.01287 0.61773 17 1.86408 e -1 16 0 0 1 1.54133 29.00941 0.01287 0.63060 17 1.86408 e 0 2 0 15 0 1.34152 30.35093 0.01287 0.64347 17 1.86408 e 1 2 0 15 0 1.34152 31.69246 0.01287 0.65634 17 1.86408 e 2 5 0 12 0 0.99010 32.68256 0.01287 0.66921 17 1.86408 e 3 10 0 7 0 0.88667 33.56923 0.01287 0.68208 17 1.86408 e 4 5 1 11 0 0.69800 34.26722 0.01287 0.69495 17 1.86408 e 5 13 2 0 2 0.84166 35.10889 0.01287 0.70782 17 1.86408 e 6 6 5 5 1 0.05480 35.16369 0.01287 0.72068 17 1.86408 e 7 5 8 2 2 0.10660 35.27029 0.01287 0.73355 17 1.86408 e 8 7 3 2 5 0.01286 35.28314 0.01287 0.74642 17 1.86408 e 9 5 6 3 3 -0.06872 35.21442 0.01287 0.75929 17 1.86408 e 10 8 4 2 3 0.05632 35.27074 0.01287 0.77216 17 1.86408 e 11 6 4 3 4 -0.09016 35.18058 0.01287 0.78503 17 1.86408 e 12 4 8 1 4 0.12956 35.31014 0.01287 0.79790 17 1.86408 e 13 3 2 7 5 0.01286 35.32300 0.01287 0.81077 17 1.86408 e 14 5 1 5 6 0.05480 35.37780 0.01287 0.82364 17 1.86408 e 15 3 2 4 8 0.05632 35.43412 0.01287 0.83651 17 1.86408 e 16 4 1 4 8 0.12956 35.56368 0.01287 0.84938 17 1.86408 e 17 8 3 1 5 0.15100 35.71469 0.01287 0.86225 17 1.86408 e 18 4 6 6 1 0.07189 35.78657 0.01287 0.87512 17 1.86408 e 19 6 4 5 2 -0.03988 35.74669 0.01287 0.88799 17 1.86408 e 20 4 6 2 5 -0.03988 35.70681 0.01287 0.90086 17 1.86408 e 21 1 4 2 10 0.31893 36.02574 0.01287 0.91373 17 1.86408 e 22 4 5 1 7 0.08610 36.11184 0.01287 0.92659 17 1.86408 e 23 4 5 3 5 -0.10725 36.00459 0.01287 0.93946 17 1.86408 e 24 7 3 3 4 -0.03742 35.96716 0.01287 0.95233 17 1.86408 e 25 7 0 4 6 0.31552 36.28268 0.01287 0.96520 17 1.86408 e 26 9 0 2 6 0.48480 36.76749 0.01287 0.97807 17 1.86408 e 27 5 5 4 3 -0.10725 36.66023 0.01287 0.99094 17 1.86408 e 28 4 3 6 4 -0.09016 36.57007 0.01287 1.00381 17 1.86408 e 29 7 3 3 4 -0.03742 36.53265 0.01287 1.01668 17 1.86408 e 30 7 3 1 6 0.12463 36.65728 0.01287 1.02955 17 1.86408 e 31 5 3 3 6 -0.06872 36.58856 0.01287 1.04242 17 1.86408 e 32 6 2 2 7 0.08022 36.66878 0.01287 1.05529 17 1.86408 e * rsequence = 36.66878 +/- 1.02727 bits/site