>
Next: A Simple Harmonic Oscillator
Up: Theory of Molecular Machines.
Previous: Lock-and-Key Model of a
To demonstrate the method used in this paper,
we first investigate the energetics of an oscillator which
executes simple harmonic motion
around its mean position without external interferences:
 |
(3) |
where h(t) is the position of the oscillator as a function of time t,
a is the amplitude of oscillation,
is the frequency of vibration,
and
is the phase.
This models the motion of a single molecular machine ``pin''.
If we choose
,
then the velocity is simply:
 |
(4) |
The velocity has two independent Fourier components [Walker, 1988]
with amplitudes x and y:
 |
(5) |
From the trigonometric identity
and equations (4) and (5)
we immediately find that
and
.
Fig. 3
represents these quantities graphically.
On this graph, the point (x, y) completely defines the state
of the oscillator at any time t.
It is important to keep in mind that x and yhave units of velocity.
Figure 3:
Geometry for a simple harmonic oscillator.
A possible state of a harmonic oscillator is represented by point A.
Its maximum velocity is r and its phase is .
This state may also be represented by the coordinate (x, y).
Distances in this figure have units of velocity.
|
In this paper we use the Fourier components (x, y) rather than
polar coordinates
because the Fourier description
is symmetrical (x and y have the same units of velocity)
whereas polar coordinates are not (they have units of velocity and angle).
The energy of the oscillator can be found from the maximum velocity
and the mass:
 |
(6) |
[Feynman et al., 1963].
The total energy is also
the sum of the energies of the two independent sinusoidal components
in equation (5)
[Stremler, 1982],
and since according to equation (4)
vmax = r,
 |
(7) |
so
This equation shows that in a vacuum,
where the total energy E is constant,
the radius r is constant
and the locus of the point (x, y) is a circle.
That is, at a given energy the set of all possible phase angles
describes a circle of radius
in a two dimensional velocity space whose axes are the
amplitudes of the two independent Fourier
components of the oscillator.
Next: A Simple Harmonic Oscillator
Up: Theory of Molecular Machines.
Previous: Lock-and-Key Model of a
Tom Schneider
1999-12-09