>

Bibliography

1

T. D. Schneider and R. M. Stephens.
Sequence logos: A new way to display consensus sequences.
Nucleic Acids Res., 18:6097-6100, 1990.
http://www.lecb.ncifcrf.gov/~toms/paper/logopaper/.

2

M. Ptashne, K. Backman, M. Z. Humayun, A. Jeffrey, R. Maurer, B. Meyer, and R. T. Sauer.
Autoregulation and function of a repressor in bacteriophage lambda.
Science, 194:156-161, 1976.

3

M. Ptashne, A. Jeffrey, A. D. Johnson, R. Maurer, B. J. Meyer, C. O. Pabo, T. M. Roberts, and R. T. Sauer.
How the $\lambda$ repressor and cro work.
Cell, 19:1-11, 1980.

4

A. H. Soukhanov and K. Ellis, editors.
Webster's II New Riverside University Dictionary.
Houghton Mifflin Co., Boston, MA, 1984.

5

C. E. Shannon.
A mathematical theory of communication.
Bell System Tech. J., 27:379-423, 623-656, 1948.
http://cm.bell-labs.com/cm/ms/what/shannonday/paper.html.

6

C. E. Shannon and W. Weaver.
The Mathematical Theory of Communication.
University of Illinois Press, Urbana, 1949.

7

J. R. Pierce.
An Introduction to Information Theory: Symbols, Signals and Noise.
Dover Publications, Inc., New York, second edition, 1980.

8

T. D. Schneider, G. D. Stormo, L. Gold, and A. Ehrenfeucht.
Information content of binding sites on nucleotide sequences.
J. Mol. Biol., 188:415-431, 1986.
http://www.lecb.ncifcrf.gov/~toms/paper/schneider1986/.

9

T. D. Schneider.
Information and entropy of patterns in genetic switches.
In G. J. Erickson and C. R. Smith, editors, Maximum-Entropy and Bayesian Methods in Science and Engineering, volume 2, pages 147-154, Dordrecht, The Netherlands, 1988. Kluwer Academic Publishers.

10

T. D. Schneider and G. D. Stormo.
Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.
Nucleic Acids Res., 17:659-674, 1989.

11

N. D. Herman and T. D. Schneider.
High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.
J. Bacteriol., 174:3558-3560, 1992.

12

T. D. Schneider.
Theory of molecular machines. I. Channel capacity of molecular machines.
J. Theor. Biol., 148:83-123, 1991.
http://www.lecb.ncifcrf.gov/~toms/paper/ccmm/.

13

T. D. Schneider.
Theory of molecular machines. II. Energy dissipation from molecular machines.
J. Theor. Biol., 148:125-137, 1991.
http://www.lecb.ncifcrf.gov/~toms/paper/edmm/.

14

M. Tribus.
Thermostatics and Thermodynamics.
D. van Nostrand Company, Inc., Princeton, N. J., 1961.

15

P. P. Papp, D. K. Chattoraj, and T. D. Schneider.
Information analysis of sequences that bind the replication initiator RepA.
J. Mol. Biol., 233:219-230, 1993.

16

N. C. Seeman, J. M. Rosenberg, and A. Rich.
Sequence-specific recognition of double helical nucleic acids by proteins.
Proc. Natl. Acad. Sci. USA, 73:804-808, 1976.

17

D. B. Davison and J. E. Chappelear.
The Genbank-server at the University of Houston.
Nucleic Acids Res., 18:1571-1572, 1990.

18

A. Bleasby, P. Griffiths, R. Harper, D. Hines, K. Hoover, D. Kristofferson, S. Marshall, N. O'Reilly, and M. Sundvall.
Electronic communications and the new biology.
Nucleic Acids Res., 20:4127-4128, 1992.

19

M. C. Shaner, I. M. Blair, and T. D. Schneider.
Sequence logos: A powerful, yet simple, tool.
In T. N. Mudge, V. Milutinovic, and L. Hunter, editors, Proceedings of the Twenty-Sixth Annual Hawaii International Conference on System Sciences, Volume 1: Architecture and Biotechnology Computing, pages 813-821, Los Alamitos, CA, 1993. IEEE Computer Society Press.
http://www.lecb.ncifcrf.gov/~toms/paper/hawaii/.