smallproteins: Small Proteins

• BiBTeX reference:

  @article{Hemm.Rudd2008,
  author = "M. R. Hemm
   and B. J. Paul
   and T. D. Schneider
   and G. Storz
   and K. E. Rudd",
  title = "{Small membrane proteins found by comparative genomics and
  ribosome binding site models}",
  journal = "Mol Microbiol",
  volume = "70",
  pages = "1487--1501",
  pmid = "19121005",
  year = "2008"}
  

• PubMed 19121005

• DATA. This is a list of potential ribosome binding sites and potential sigma⁷⁰ promoters in intergenic regions of E. coli displayed as sequence walkers.

    Final data set 2007 Dec 06: only orfs in the range 10 to 150 codons with the REPs removed.
  • smallproteins-list.txt - list of potential RBS sorted from the strongest to the weakest in bits.
  • samples - regions displayed as sequence walkers.

  Dr. Thomas D. Schneider
  National Institutes of Health
  National Cancer Institute
  Center for Cancer Research Nanobiology Program
  Molecular Information Theory Group
  Frederick, Maryland  21702-1201
  toms@ncifcrf.gov
  permanent email: toms@alum.mit.edu (use only if first address fails)
  http://www.ccrnp.ncifcrf.gov/~toms/

Schneider Lab
origin: 2008 Feb 03
updated: 2009 Jan 06


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