2002 December 5

README file for the paper:

Consensus Sequence Zen
Thomas D. Schneider
Applied Bioinformatics 2002: 1(3)111-119

This directory contains all components necessary to
typeset the paper using LaTeX 2e.

TO READ THE PAPER, just see the file zen.pdf or zen.ps (postscript).

The latex is run by these commands:

  latex zen
  bibtex zen
  latex zen
  latex zen

THE FILES ARE:

all.bib           - bibtex format bibliography
definitions.tex   - tex file: definitions used
html.sty          - style file to allow conversion to html
minusten.eps      - encapsulated postscript
noconsensus.eps   - encapsulated postscript (Note: not used in the paper)
openmind.bst      - bibliography program for openmind
openmind.sty      - style file for openmind
random.eps        - encapsulated postscript
repalogo.eps      - encapsulated postscript
rsco.eps          - encapsulated postscript
rsco.tex          - tex file: the table
splicelogo.eps    - encapsulated postscript
tgtsec.eps        - encapsulated postscript
walker.eps        - encapsulated postscript
zen.aux           - auxilary file for LaTeX file: the paper
zen.bbl           - bibliography file: the paper
zen.blg           - log file for bibliography file: the paper
zen.dvi           - dvi file: the paper
zen.log           - log file: the paper
zen.pdf           - PDF file: the paper
zen.ps            - postscript file: the paper
zen.rtf           - RTF file: the paper
zen.tex           - tex file: the paper

The eps files are also supplied in jpg format:
minusten.jpg
noconsensus.jpg
random.jpg
repalogo.jpg
rsco.jpg
splicelogo.jpg
tgtsec.jpg
walker.jpg
NOTE:  Using www.imagemagick.org you can convert to ANY format you need.

THE RTF IS NOT VERY GOOD.  Sorry, the latex2rtf converter is still
being developed.  References are lost and the parenthesis are not
balanced for some reason.  I have alerted the author about the
problems.

zen.tex is the main file.

  Dr. Thomas D. Schneider
  National Cancer Institute
  Laboratory of Experimental and Computational Biology
  Frederick, Maryland  21702-1201
  toms@ncifcrf.gov
  permanent email: toms@alum.mit.edu
  http://www.lecb.ncifcrf.gov/~toms/